When I run the Sage Intelligence for Combined Financials, it combines both companies, but for accounts that are the same numbers, it doubles them. It adds a line for Company A, with the total of Company A and Company B, then adds a line for Company B with the same total.
Company A - Cash $5,000
Company B - Cash $1,000
Export shows:
Cash A - $6,000
Cash B - $6,000
The Financials Have $12,000 cash instead of $6,000.
This happens with any similar account numbers, which are basically the same between the two companies.