MIBFA report not Balancing to Payroll Register

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Hi. Last Month we paid employees on the forecast, and "minused" hours in the current month for one of our MEIBC companies, and as a result, I have 9 employees with the negative provident, sick fund, and levies deductions and co.contributions that are negative. After exporting .txt files for submission with MIBFA, those 9 employees not pulling due to negative amounts. Clearly, MEIBC owing us that amounts as it should be returned to us. Is anybody had a situation like this in your reporting? How do I proceed with that?