BOI - Bypass Separate Check Popup

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I'm working on a BOI script to create Manual Check entries from a CSV. 

Everything can import successfully, except when the invoice was set with SeparateCheck = "Y". In regular UI, you get the popup message "The Invoice ____ is flagged for separate check. Do you want to continue? Yes/No".

I would like my BOI script to answer Yes and allow the InvoiceNo to be paid -- is this possible in BOI? The message occurs when I run an oLines.nSetValue for the InvoiceNo.

Thanks!

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