Did you try running the Bank Reconciliation Transaction Register?  (GL likely needs to be integrated with BR for this to work... in GL Options).

I verified and the integrate with BR button is checked in GL Options.  I ran the bank reconciliation transaction register.  My checks and deposits are there as outstanding since we have not reconciled September bank stmt. but the entries are not positing to GL   Any other ideas?  I am new to sage and this bank reconciliation is very different from what I have ever seen.

I got it!!  I had to run the BR trans Register from within the check, deposit & adjustment entry screen and it picked them up.

Running the register is not enough.  You have to click "Yes" when prompted to update.

And then print / update the DTR.

We have a series of Anytime Learning videos that recently launched to learn how to use the Bank Reconciliation module. Check out Sage U