We have phantom bills created in 4.5 that contained a "standard" component.  When entering a material issue in work order transaction entry the material pulled from inventory would be exactly shown on the below indented BOM.

But since our upgrade to 2016 when entering a material issue in work order transaction entry the material pulled from inventory is the lowest level components.  In my indented BOM it would be all levels except for the standard item.

Therefore it is not re-leaving inventory properly and we are experiencing negative quantities on the lowest level components. 

How can I get the system to pull only the single-level items?