Time and Material wage rate calculation does not match what it should for wage rates set up for jobs T&M.

How do you get them to match without manually changing the cost on each employees T&M billing (6-3). I have set up wage and material rates for this project, and set up the billing. After calculating, the material cost, and subcontractor costs match, however the labor is off each day. Should it automatically pull the wage rate set up or do I have to manually override the billing amount and enter each employees billing cost?