You made mistakes, like not actually posting the entry, or posting it in the wrong period. Check your work.

If the entries were not posted, how would they be in the G/L?

I repeat, check your work, you made some mistakes.

Can you be more specific about how to check the work?  I have verified the three entries posted in the same month to the correct bank accounts. I have also ran a transfer posting journal in the bank services and all three transactions posted to the same month and to the correct banks.  What else can I check?

It sounds like you mistakenly used a bank entry for your correction rather than a bank transfer.

No, I confirmed it was a bank transfer.

I really hope you didn't enter anything into the service charges section of the bank transfer.  Did you just enter From Bank To Bank and the amount?

If you are still having problems, we would be glad to take a look at the data (if reasonable size). 

[email protected] 

Try to recalculate - on the bank rec screen there is a Calculate button, see if that fixes it.

No, it was just bank to bank

Nope, our consultant looked at it and couldn't figure it out either.  Just did a bank entry and coded it to the GL bank account so it was a wash on the GL, but fixed the bank balance.  Not really what i wanted to do, but it did work as a fix.  Guess it will remain a Sage mystery as to why it happened in the first place....