You entered something in the Other Account field - right?

Then you will not see it in the bank reconciliation.

If you want to see it in the bank rec then you need to leave Other Account blank.

Thank you Ettienne.  I DID enter the bank account into the "Other Account" field.  Interesting behavior - but not entirely intuitive.  

I guess this is a way to use the A/P payment module to apply documents so some other account, like a long term liability or otherwise.

How did you fix this issue?  I have the same problem.  

How do you fix this issue once it's posted - since there is no banking module involved I can't even reverse the payment.  

Create a bank entry using the same account number that you entered into the "Other" field.

And then a journal entry to offset it?  That makes sense.  

Yeah, thought this through.  Perfect solution.  Book the bank entry and then book a journal entry reversing the effect of the bank entry using the GL module.  This gives me something to click on my bank rec. without any net affect to the general ledger if I use all the same dates.  Thank you!